Analysis of Cell Division and Lineage Tree based on 4D Cell Image Data

CShaper: Automated Cell Image Analysis System

We have developed an automated system, CShaper, for the analysis of 4D data taken during cell division. It performs cell segmentation, tacking, visualization and lineage reconstruction. The block diagram of our system is shown below. Diagrams on this page are taken from our recent paper (J. Cao, G. Guan, V. W. S. Ho, M. K. Wong, L. Y. Chan, C. Tang, Z. Y. Zhao, and H. Yan, "Establishment of morphological atlas of Caenorhabditis elegans embryo using deep-learning-based 4D segmentation," Nature Communications, accepted.)

The following diagram shows the comparison of our system with other ones.